Person

DI (FH) Dr.techn. Viktoria Dorfer MSc

Education

Johannes Kepler University Linz, Dr. techn.
Nov 2012 - Mar 2019
FH OÖ Campus Hagenberg, Biomedizinische Informatik, MSc.
Oct 2009 - Jul 2011
FH OÖ Campus Hagenberg, Bioinformatik, Dipl.-Ing. (FH)
Oct 2003 - Sep 2007
Akademisches Gymnasium Linz
Sep 1995 - Jul 2003

Professional career & activities

FH OÖ, Department of Medical and Bioinformatics, Teaching Assistant of Machine Learning, Proteomics
Mar 2016 - dato
FH OÖ Forschungs & Entwicklungs GmbH, Research Associate
Oct 2007 - Feb 2016
2019
S. Dorl, S. M. Winkler, K. Mechtler, V. Dorfer - MS Ana: A spectral library search engine optimized for high-accuracy fragment ion data - Proceedings of the 2019 EuBIC Winter School on proteomics bioinformatics, Zakopane, Poland, 2019 more
2018
E. W. Deutsch, Y. Perez-Riverol, R. J. Chalkley, M. Wilhelm, S. Tate, T. Sachsenberg, M. Walzer, L. Käll, B. Delanghe, S. Böcker, E. L. Schymanski, P. Wilmes, V. Dorfer, B. Küster, P. Volders, N. Jehmlich, J. Vissers, D. W. Wolan, A. Y. Wang, L. Mendoza, J. Shofstahl, A. W. Dowsey, J. Griss, R. Salek,… more
2018
S. Willems, D. Bouyssie, D. Deforce, V. Dorfer, V. Gorshkov, D. Kopczynski, K. Laukens, M. Locard-Paulet, V. Schwämmle, J. Uszkoreit, D. Valkenborg, M. Vaudel, W. Bittremieux - Proceedings of the EuBIC developer's meeting 2018 - Journal of Proteomics, 2018, pp. 25-27 more
2018
V. Dorfer, S. Maltsev, S. M. Winkler, K. Mechtler - CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction - Journal of Proteome Research, 2018, pp. 2581-2589 more
2017
S. Willems, D. Bouyssie, M. David, M. Locard-Paulet, K. Mechtler, V. Schwämmle, J. Uszkoreit, M. Vaudel, V. Dorfer - Proceedings of the EuBIC Winter School 2017 - Journal of Proteomics, 2017, pp. 78-80 more
2017
S. Dorl, S. M. Winkler, K. Mechtler, V. Dorfer - Identifying tandem mass spectra of phosphorylated peptides before database search using machine-learning - Proceedings of the 2017 EuBIC Winter School on proteomics bioinformatics, Semmering, Austria, 2017 more
2017
S. Dorl, S. M. Winkler, K. Mechtler, V. Dorfer - PhoStar: Identifying Tandem Mass Spectra of Phosphorylated Peptides before Database Search - Journal of Proteome Research, 2017 more
2016
D. M. Borgmann, S. Mayr, H. Polin, S. Schaller, V. Dorfer, L. Obritzberger, T. Endmayr, C. Gabriel, S. M. Winkler, J. Jacak - Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification - Scientific Reports, Vol. 6, No. 32317, 2016 more
2016
S. Mayr, D. M. Borgmann, H. Polin, S. Schaller, T. Endmayr, L. Obritzberger, V. Dorfer, C. Gabriel, S. M. Winkler, J. Jacak - Classification of Rhesus D Antigen Expression at Single Molecule Level by High-Resolution Fluorescence Microscopy and Machine Learning - Proceedings of the Annual Winterworkshop,… more
2016
S. Dorl, S. M. Winkler, K. Mechtler, V. Dorfer - Identifying tandem mass spectra of phosphorylated peptides before database search using machine-learning - Proceedings of the Austrian Proteomics Research Symposium (APRS2016), Wien, Austria, 2016 more
2015
D. M. Borgmann, S. Mayr, H. Polin, L. Obritzberger, S. Schaller, V. Dorfer, J. Jacak, S. M. Winkler - Classifying Human Blood Samples Using Characteristics of Single Molecules and Cell Structures on Microscopy Images - Lecture Notes in Computer Science LNCS 9520, Las Palmas, Gran Canaria, Spain, 2015,… more
2015
S. M. Winkler, S. Schaller, D. M. Borgmann, V. Dorfer, M. Affenzeller, J. Jacak, H. Redl, J. Weghuber - Identification and classification of objects and motions in microscopy images of biological samples using heuristic algorithms in Studies in Computational Intelligence (Contributions to Book: Part/Chapter/Section… more
2015
V. Dorfer, S. Maltsev, S. Dreiseitl, K. Mechtler, S. M. Winkler - A Symbolic Regression Based Scoring System Improving Peptide Identifications for MS Amanda - Proceedings of the 11th GECCO Workshop on Medical Applications of Genetic and Evolutionary Computation MedGEC, Madrid, Spain, 2015 more
2015
V. Dorfer, S. Maltsev, S. M. Winkler, K. Mechtler - Chimeric MS/MS Spectra Identification using MS Amanda - Proceedings of 63rd ASMS Conference on Mass Spectrometry and Allied Topics (ASMS 2015), St. Louis, United States of America, 2015 more
2015
L. Obritzberger, D. M. Borgmann, S. Schaller, V. Dorfer, A. Lindenmair, S. Wolbank, H. Redl, S. M. Winkler - Prediction of Mineralization Degree in Human Amniotic Membrane Using Image Processing Techniques and Machine Learning - Proceedings of the 11th Metaheuristics International Conference, Agadir,… more
2015
L. Obritzberger, D. M. Borgmann, S. Schaller, V. Dorfer, A. Lindenmair, S. Wolbank, S. Hennerbichler, H. Redl, S. M. Winkler - Prediction of Stem Cell Differentiation in Human Amniotic Membrane Microscopy Images Using Machine Learning - Lecture Notes in Computer Science LNCS 9520, Las Palmas, Gran Canaria,… more
2014
V. Dorfer, P. Pichler, T. Stranzl, J. Stadlmann, T. Taus, S. M. Winkler, K. Mechtler - MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra - Journal of Proteome Research, Vol. 13, No. 8, 2014, pp. 3679-3684 more
2014
V. Dorfer, G. Dürnberger, S. M. Winkler, K. Mechtler - Searching Chimeric MS/MS Spectra with MS Amanda - Proceedings of the 12th Austrian Proteomic Research Symposium (APRS 2014), Salzburg, Austria, 2014 more
2014
V. Dorfer, P. Pichler, T. Stranzl, G. Dürnberger, S. M. Winkler, K. Mechtler - A Standalone Version of MS Amanda for Integration into Proteomics Workflows - Proceedings of the 13th Human Proteome Organization World Congress (HUPO 2014), Madrid, Spain, 2014 more
2014
V. Dorfer, P. Pichler, T. Stranzl, S. M. Winkler, K. Mechtler - MS Amanda Stand-Alone for Integration in Proteomics Workflows - Proceedings of 62rd ASMS Conference on Mass Spectrometry and Allied Topics (ASMS 2014), Baltimore, United States of America, 2014 more
2014
L. Obritzberger, S. Schaller, V. Dorfer, C. Loimayr, S. Hennerbichler, S. M. Winkler - Identification of Endothelial Cell Morphology in Cornea Using Evolution Strategies - Proceedings of the 26th European Modeling and Simulation Symposium EMSS 2014, Bordeaux, France, 2014 more
2014
S. M. Winkler, S. Schaller, V. Dorfer, M. Affenzeller, G. Petz, M. Karpowicz - Data-based prediction of sentiments using heterogeneous model ensembles - Soft Computing, 2014, pp. 12 more
2014
S. Wagner, G. K. Kronberger, A. Beham, M. Kommenda, A. Scheibenpflug, E. Pitzer, S. Vonolfen, M. Kofler, S. M. Winkler, V. Dorfer, M. Affenzeller - Architecture and Design of the HeuristicLab Optimization Environment in Advanced Methods and Applications in Computational Intelligence (Contributions to… more
2013
V. Dorfer, P. Pichler, S. M. Winkler, K. Mechtler - MS Amanda: A Novel Algorithm for the Identification of High Accuracy Tandem Mass Spectrometry Data - Proceedings of 11th Austrian Proteomic Research Symposium (APRS 2013), Innsbruck, Austria, 2013 more
2013
V. Dorfer, P. Pichler, S. M. Winkler, K. Mechtler - MS Amanda: A Novel Algorithm for the Identification of High Accuracy Tandem Mass Spectrometry Data - 61st ASMS Conference on Mass Spectrometry and Allied Topics, Minneapolis, United States of America, 2013 more
2012
V. Dorfer, P. Pichler, S. M. Winkler, K. Mechtler - Identifying HCD & ETD Spectra – A New Approach - Proceedings of the 10th Austrian Proteomic Research Symposium, Graz, Austria, 2012 more
2012
S. Schaller, S. M. Winkler, V. Dorfer, G. Petz, H. Fürschuß - A Machine Learning Suite for Opinion Mining in Web 2.0 - Proceedings of IEEE APCAST'12 Conference, Sydney, Australia, 2012, pp. 10-13 more
2012
H. Fürschuß, G. Petz, P. Faschang, S. Schaller, S. M. Winkler, V. Dorfer - Qualitative Bedarfserhebung an Opinion Mining Tools im Web 2.0 - Proceedings of 6th FFH 2012, Graz, Austria, 2012, pp. 33-36 more
2011
V. Dorfer, S. M. Winkler, T. Kern, S. Blank, G. Petz, P. Faschang - Keyword Clustering in Biomedical Information Retrieval Using Evolutionary Algorithms - Proceedings of the 19th Annual International Conference on Intelligent Systems for Molecular Biology and 10th European Conference on Computational… more
2011
P. Faschang, G. Petz, V. Dorfer, T. Kern, S. M. Winkler - A process modell for opinion mining on web 2.0 - Proceedings of the fifth Research Forum of the Austrian University of Applied Sciences, Wien (Favoriten), Austria, 2011, pp. 144-147 more
2011
V. Dorfer, S. M. Winkler, T. Kern, G. Petz, P. Faschang - Analysis of Single-Objective and Multi-Objective Evolutionary Algorithms in Keyword Cluster Optimization - Proceedings of International Conference on Computer Aided Systems Theory EUROCAST 2011, Las Palmas, Spain, 2011, pp. 3 more
2011
S. Wagner, A. Beham, G. K. Kronberger, M. Kommenda, E. Pitzer, M. Kofler, S. Vonolfen, S. M. Winkler, V. Dorfer, M. Affenzeller - HeuristicLab 3.3: An Extendable and Flexible Software System for Heuristic Optimization - Proceedings of the fifth Research Forum of the Austrian University of Applied Sciences,… more
2011
V. Dorfer - On the Optimization of Keyword Clustering Using Evolutionary Algorithms - Master/Diploma Thesis, FH OÖ Fakultät Hagenberg, Austria, 2011, pp. 1-50 more
2011
P. Faschang, G. Petz, V. Dorfer, T. Kern, S. M. Winkler - An Approach to Mining Consumer's Opinion on the Web - Proceedings of the 13th International Conference on Computer Aided Systems Theory (EUROCAST 2011), Las Palmas de Gran Canaria, Spain, 2011, pp. 37-39 more
2011
V. Dorfer, S. M. Winkler, T. Kern, S. Blank, G. Petz, P. Faschang - On the Performance of Evolutionary Algorithms in Biomedical Keyword Clustering - Proceedings of the Genetic and Evolutionary Computation Conference GECCO 2011, Dublin, Ireland, 2011 more
2011
P. Faschang, G. Petz, M. Wimmer, V. Dorfer, S. M. Winkler - Evaluation of Tools for Opinion Mining - Proceedings of the 2011 international Conference on E-Learning, E-Business, Enterprise Information Systems & E-Government, Las Vegas, United States of America, 2011, pp. 3-9 more
2010
S. Wagner, A. Beham, G. K. Kronberger, M. Kommenda, E. Pitzer, M. Kofler, S. Vonolfen, S. M. Winkler, V. Dorfer, M. Affenzeller - HeuristicLab 3.3: A unified approach to metaheuristic optimization - Proceedings of the 7th spanish congress on Metaheuristics, Evolutionary and Bioinspired Algorithms (MAEB'2010),… more
2010
V. Dorfer, S. M. Winkler, T. Kern, G. Petz, P. Faschang - Optimization of Keyword Grouping in Biomedical Information Retrieval Using Evolutionary Algorithms - 22nd European Modeling and Simulation Symposium EMSS 2010, Fes, Morocco, 2010, pp. 25-30 more
2009
C. Frech, M. Kommenda, V. Dorfer, T. Kern, H. Hintner, J. W. Bauer, K. Oender - Improved Homology-driven Computational Validation of Protein-Protein Interactions Based on Evolutionary Gene Duplication and Divergence Hypothesis - BMC Bioinformatics, Vol. 10, No. 1, 2009, pp. 18 more
2009
T. Kern, M. Kommenda, V. Dorfer, J. W. Bauer, K. Oender - PRIMOS: AN INTEGRATED PLATFORM FOR EXPLORING PROTEIN-PROTEIN INTERACTIONS - Proceedings of 21st European Modeling and Simulation Symposium EMSS 2009, Tenerife, Spain, 2009, pp. 6 more
2008
M. Kommenda, C. Frech, V. Dorfer, T. Kern, J. W. Bauer, K. Oender - Integration and simplification of protein-protein interaction data - Proceedings of FFH2008, Wels, Austria, 2008, pp. 434-438 more
2013
Fluorescence microscopy is going to become one of the core technologies for biomedical research and diagnostics. Therefore, image analysis is an increasing challenge for biomedical researchers. In the… more
2013
To identify proteins in biological samples mass spectrometry (MS) is most often applied: proteins are digested to peptides which are subsequently analyzed. Within the last decade, a new generation of mass… more
2011
2010
In our modern knowledge society, the effective use of mostly unstructured and exponentially growing data is one of the biggest challenges for computer science. Humans as information receivers only have… more
2003
In the past few years, the promises of biotechnology - understanding the human body and its intercellular processes, detailed knowledge of health and disease, better diagnostics and treatments - have been… more