Person

FH-Assistenzprof. Susanne Schaller MMSc

Education

University of Skövde, Bioinformatik, MSc
Aug 2008 - Jun 2009
University of Applied Sciences Upper Austria, Hagenberg, Biomedizin Informatik, MSc
Oct 2008 - Jul 2010
University of Applied Sciences Upper Austria, Hagenberg, Bioinformatik, BSc
Oct 2005 - Jul 2008
Gymnasium der Kreuzschwester Gmunden
Sep 1997 - Jun 2005

Professional career & activities

FH OÖ Research & Development , wissenschaftliche Mitarbeiterin
Oct 2011 - dato
DNASTAR, Inc., Junior Software Engineer
Aug 2009 - Sep 2011
Siemens Medical Solutions Diagnostics GmbH, Data Analyst
Feb 2008 - Jun 2008
2019
M. Sarajlic, T. Neuper, K. Föhrenbach Quiroz, S. Michelini, J. Vetter, S. Schaller, J. Horejs-Hoeck - IL-1β Induces SOCS2 Expression in Human Dendritic Cells - International Journal of Molecular Sciences, Vol. 20, No. 23, 2019 more
2019
J. Vetter, J. Burghofer, T. Malli, G. Webersinke, W. Kranewitter, M. Wiederstein, S. Schaller, S. M. Winkler - A Bioinformatics Pipeline for Identifying Point Mutations in CML Patients - Proceedings of the 27th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Basel,… more
2019
R. Reindl-Schwaighofer, J. Vetter, J. Weinberger, S. Schaller, A. Heinzel, G. Gualdoni, C. Aschauer , K. Jelencsics , K. Hu, S. M. Winkler, R. Oberbauer - T-Cell Repertoire of Tissue Infiltrating T-Cells at Time of Rejection - Proceedings of the American Transplant Congress, Boston, United States of… more
2019
C. Aschauer , K. Jelencsics , K. Hu, A. Heinzel, J. Vetter, T. Fraunhofer, S. Schaller, S. M. Winkler, L. Pimenov, G. Gualdoni, M. Eder, A. Kainz, H. Regele, R. Reindl-Schwaighofer, R. Oberbauer - Next generation sequencing based assessment of the alloreactive T cell receptor repertoire in kidney transplant… more
2018
J. Vetter, G. Halmerbauer, K. Arthofer, S. Schaller, C. Ausch, A. Shamiyeh, W. Schauer, T. Koenigswieser, S. M. Winkler - (Retrospektive) Prädiktion von medizinischen Komplikationen auf Basis von Routinedaten in Krankenhäusern mittels Multi-Model-Ensembles - Proceedings of the 4th Kepler Science Day,… more
2018
J. Vetter, S. M. Winkler, T. Fraunhofer, S. Schaller - High-throughput Immune Repertoire Sequencing Analysis using the Software ImmunExplorer - Proceedings of the German Conference on Bioinformatics, Vienna, Austria, 2018 more
2017
M. Pavic, K. Bouchal, S. Fregnan, F. Hametner, M. Luckeneder, S. Weinzinger, J. Weinberger, S. M. Winkler, S. Schaller - ImmunExplorer Online: Implementation of a Webservice for Analyzing Clonality and Diversity of NGS Data - Proceedings of the 25th Annual International Conference on Intelligent Systems… more
2016
D. M. Borgmann, S. Mayr, H. Polin, S. Schaller, V. Dorfer, L. Obritzberger, T. Endmayr, C. Gabriel, S. M. Winkler, J. Jacak - Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification - Scientific Reports, Vol. 6, No. 32317, 2016 more
2016
S. Mayr, D. M. Borgmann, H. Polin, S. Schaller, T. Endmayr, L. Obritzberger, V. Dorfer, C. Gabriel, S. M. Winkler, J. Jacak - Classification of Rhesus D Antigen Expression at Single Molecule Level by High-Resolution Fluorescence Microscopy and Machine Learning - Proceedings of the Annual Winterworkshop,… more
2015
J. Jacak, S. Schaller, D. M. Borgmann, S. M. Winkler - Characterization of the Distance Relationship Between Localized Serotonin Receptors and Glia Cells on Fluorescence Microscopy Images of Brain Tissue - MICROSCOPY AND MICROANALYSIS, Vol. 21, No. 4, 2015 more
2015
D. M. Borgmann, S. Mayr, H. Polin, L. Obritzberger, S. Schaller, V. Dorfer, J. Jacak, S. M. Winkler - Classifying Human Blood Samples Using Characteristics of Single Molecules and Cell Structures on Microscopy Images - Lecture Notes in Computer Science LNCS 9520, Las Palmas, Gran Canaria, Spain, 2015,… more
2015
S. M. Winkler, S. Schaller, D. M. Borgmann, V. Dorfer, M. Affenzeller, J. Jacak, H. Redl, J. Weghuber - Identification and classification of objects and motions in microscopy images of biological samples using heuristic algorithms in Studies in Computational Intelligence (Contributions to Book: Part/Chapter/Section… more
2015
S. Schaller, J. Weinberger, R. Jimenez-Heredia, M. Danzer, S. M. Winkler - ImmunExplorer (IMEX): A detailed analysis of the health status of the immune system using NGS immunoglobulin and T cell receptor IMGT/HighV-QUEST data - 4th European Congress of Immunology, Vienna, Austria, 2015 more
2015
S. Mayr, D. M. Borgmann, H. Polin, S. Schaller, C. Gabriel, J. Jacak, S. M. Winkler - Characterization of Rare Aberrant D Antigens on Erythrocyte Cell Surfaces using Single Molecule Fluorescence Microscopy and Machine Learning - XVI. Annual Linz Winter Workshop, JKU Linz, Austria, 2015 more
2015
S. Schaller, J. Weinberger, M. Danzer, S. M. Winkler - Modelling States of Human Adaptive Immune Systems by Analyzing B- and T-Cell Receptors using Machine Learning - Lecture Notes in Computer Science LNCS 9520, Las Palmas, Gran Canaria, Spain, 2015 more
2015
S. Schaller, J. Weinberger, M. Danzer, S. M. Winkler - Detailed Analysis of Clonality, Diversity, and Gene Frequency Distributions in B- & T-Cell Receptors based on NGS Data - Proceedings of the VIB Conference Series: Revolutionizing Next-Generation Sequencing: Tools and Technologies, Leuven, Belgium,… more
2015
M. Danzer, J. Weinberger, R. Jimenez-Heredia, S. Schaller, S. Süssner, S. M. Winkler, J. Sunzenauer, R. Oberbauer, H. Steitzer, C. Gabriel - Profiling the T- and B-cell receptor repertoire of a patient with acute kidney rejection by high-throughput sequencing - Proceedings of the 29th European Immunogenetics… more
2015
S. Schaller, J. Weinberger, R. Jimenez-Heredia, M. Danzer, R. Oberbauer, C. Gabriel, S. M. Winkler - ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data - BMC Bioinformatics, Vol.… more
2015
L. Obritzberger, D. M. Borgmann, S. Schaller, V. Dorfer, A. Lindenmair, S. Wolbank, S. Hennerbichler, H. Redl, S. M. Winkler - Prediction of Stem Cell Differentiation in Human Amniotic Membrane Microscopy Images Using Machine Learning - Lecture Notes in Computer Science LNCS 9520, Las Palmas, Gran Canaria,… more
2015
L. Obritzberger, D. M. Borgmann, S. Schaller, V. Dorfer, A. Lindenmair, S. Wolbank, H. Redl, S. M. Winkler - Prediction of Mineralization Degree in Human Amniotic Membrane Using Image Processing Techniques and Machine Learning - Proceedings of the 11th Metaheuristics International Conference, Agadir,… more
2014
J. Weinberger, R. Jimenez-Heredia, S. Schaller, M. Danzer, J. Sunzenauer, S. Süssner, H. Polin, S. M. Winkler, R. Oberbauer, C. Gabriel - Next-generation sequencing based receptor repertoire analysis reveals that expanded B- and T-cells can be found in renal tissue as well as in peripheral blood - Proceedings… more
2014
L. Obritzberger, S. Schaller, V. Dorfer, C. Loimayr, S. Hennerbichler, S. M. Winkler - Identification of Endothelial Cell Morphology in Cornea Using Evolution Strategies - Proceedings of the 26th European Modeling and Simulation Symposium EMSS 2014, Bordeaux, France, 2014 more
2014
S. Schaller, J. Weinberger, M. Danzer, C. Gabriel, R. Oberbauer, S. M. Winkler - Mathematical Modeling of the Diversity in Human B and T Cell Receptors using Machine Learning - Proceedings of the 26th European Modeling and Simulation Symposium EMSS 2014, Bordeaux, France, 2014 more
2014
S. Schaller, J. Weinberger, M. Danzer, S. M. Winkler - ImmunExplorer: A Framework for NGS-based Characterization and Visualization of the Human Immune System - Proceedings of the 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, United States of America,… more
2014
S. M. Winkler, S. Schaller, V. Dorfer, M. Affenzeller, G. Petz, M. Karpowicz - Data-based prediction of sentiments using heterogeneous model ensembles - Soft Computing, 2014, pp. 12 more
2013
J. Jacak, S. Schaller, M. Sams, D. M. Borgmann, R. Silye, S. M. Winkler - Spatial Analysis Approach for the Classification of Localization Microscopy Images - Linz Winter School 2013, Linz, Austria, 2013 more
2013
S. Schaller, J. Jacak, D. Gschwandtner, P. Bettelheim, S. M. Winkler - Identification of PNH Affected Cells by Classifying Motion Characteristics of Single Molecules - Proceedings of the International Workshop on Innovative Simulation for Health Care (IWISH), Athen, Greece, 2013, pp. 52-57 more
2013
S. Schaller, J. Jacak, P. Bettelheim, D. Gschwandtner, S. M. Winkler - Analyzing Motion Characteristics of Single Molecules for Providing Evidence of PNH in Microscopy Images - Proceedings of the 21st Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Berlin, Germany,… more
2013
S. Schaller, J. Jacak, M. Sams, S. M. Winkler - Statistical Analysis of the Relationship between Spots and Structures in Microscopy Images - Lecture Notes in Computer Science LNCS 8111, Las Palmas de Gran Canaria, Spain, 2013 more
2012
S. Schaller, S. M. Winkler, V. Dorfer, G. Petz, H. Fürschuß - A Machine Learning Suite for Opinion Mining in Web 2.0 - Proceedings of IEEE APCAST'12 Conference, Sydney, Australia, 2012, pp. 10-13 more
2012
P. Lanzerstorfer, D. M. Borgmann, A. Steininger, S. Schaller, M. Brameshuber, S. Sunzenauer, O. Höglinger, J. Weghuber - Analysis of Protein-Protein Interactions in Live Cells - The Micropatterning Approach in Basic Methods in Protein Purification and Analysis, 2012 more
2012
G. Petz, M. Karpowicz, H. Fürschuß, A. Auinger, S. M. Winkler, S. Schaller, A. Holzinger - On Text Preprocessing for Opinion Mining Outside of Laboratory Environments - Active Media Technology, Macau, China, 2012, pp. 618-629 more
2012
S. Schaller, J. Jacak, D. M. Borgmann, J. Weghuber, S. M. Winkler - An Image Analysis Suite for Automated Spot Detection in Cellular and Nano Structures of Microscopy Images - Proceedings of the 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA,… more
2012
S. Schaller, S. M. Winkler, J. Weghuber, M. Sams, J. Jacak - µDetect: Design of a Framework for Optimized Structure Analysis in Fluorescence Microscopy Images - Proceedings of 6th FFH 2012, Graz, Austria, 2012, pp. 125-129 more
2012
D. Borgmann, J. Weghuber, S. Schaller, J. Jacak, S. M. Winkler - Identification of Patterns in Microscopy Images of Biological Samples using Evolution Strategies - Proceedings of the 24th European Modeling and Simulation Symposium EMSS 2012, Vienna, Austria, 2012, pp. 271-276 more
2012
H. Fürschuß, G. Petz, P. Faschang, S. Schaller, S. M. Winkler, V. Dorfer - Qualitative Bedarfserhebung an Opinion Mining Tools im Web 2.0 - Proceedings of 6th FFH 2012, Graz, Austria, 2012, pp. 33-36 more
2013
Within the Regio 13 project "Transplant - markers for humoral and cellular rejection after renal transplantation" (Lead: Blutzentrale of the OÖRK) we research whether and how next-generation… more
2013
Fluorescence microscopy is going to become one of the core technologies for biomedical research and diagnostics. Therefore, image analysis is an increasing challenge for biomedical researchers. In the… more
2011
Receptor proteins on the surface of human cells play a key role in the transmission of signals from the environment into the interior of the cell. A complex network of these proteins controls all cellular… more